QuickBooks Elite Payroll: Should Your Company Switch? (Pros, Cons & Temp Employee Fixes)

Yes—QuickBooks Elite Payroll can centralize time tracking for 150+ employees, including temp workers paid via agency invoices. But it’s not perfect. Here’s what you need to know before migrating from TSheets:

  • Temp employees: You can track their time in Elite without adding them to your regular payroll.
  • Payroll integration: Elite syncs with QuickBooks to automate wage calculations, tax filings, and agency invoicing.
  • Downsides: Steep learning curve, higher cost, and limited flexibility for complex temp agency setups.

Let’s break down how Elite solves your current mess—and whether it’s worth the switch.

The Problem: Why Your Time Tracking Feels Like a Nightmare

You’re juggling TSheets + another system, temp workers aren’t integrated, and payroll feels chaotic. Here’s why:

  • Double Data Entry: Manually reconciling time between two systems.
  • Temp Worker Limbo: Can’t track temp hours in TSheets? So you’re stuck with spreadsheets or agency portals.
  • Invoice Chaos: Paying temp agencies separately means more paperwork and reconciliation errors.

Real-World Example:
One manufacturing client we worked with had 200 employees and 50 seasonal temps. Their team wasted 10+ hours weekly cross-referencing TSheets with agency timesheets. After switching to Elite, they cut that time to 2 hours—but only after ironing out a few hiccups.

How QuickBooks Elite Solves Your Temp Employee Headache

1. Track Temp Hours Without Adding Them to Payroll

  • Create “Non-Payroll” Employees: In Elite, add temps as “Employees” but mark them as “Do Not Pay”.
  • Assign to Departments/Projects: Track their hours alongside regular staff (e.g., “Warehouse Temps” or “Seasonal Help”).
  • Export Hours to Agency Invoices: Generate reports with temp hours/rates and attach them directly to vendor bills in QuickBooks.

No more manual spreadsheets!

2. Consolidate Time Tracking in One Place

  • Ditch TSheets: Elite includes built-in time & attendance tools with GPS clock-ins, PTO tracking, and mobile apps.
  • Customizable Permissions: Restrict temp workers to clock-in/out only (no payroll access).

3. Automate Agency Payments

  • Auto-Create Vendor Bills: Elite can generate invoices for temp agencies based on hours worked + agreed rates.
  • Sync with QuickBooks: Bills flow directly into Accounts Payable for payment.

The Downsides of Elite (And Workarounds)

1. Cost: Elite starts at 10/month/employee+500 setup—pricey for 150+ users.

  • Workaround: Negotiate bulk discounts with Intuit or consider mid-tier plans.

2. Learning Curve: The interface is clunky compared to TSheets.

  • Fix: Use Intuit’s free onboarding or hire a ProAdvisor for training.

3. Temp Agency Limitations:

  • Elite can’t directly integrate with agency payroll systems.
  • Solution: Export CSV files of temp hours and upload them to your agency’s portal.

QuickBooks Elite vs. Alternatives

Feature Elite Payroll Gusto Rippling
Temp Worker Tracking ✅ (Manual exports) ✅ (Full integration)
Time & Attendance Tools
Scalability (150+ employees)
Cost (Monthly) $$$$ $$ $$$$$

Verdict: Elite is best for companies already using QuickBooks Desktop who need deep accounting integration. For better temp agency tools, consider Rippling—but expect higher costs.

“Should We Switch?” A Checklist for Your Team

  1. Calculate Costs: Compare Elite’s pricing with your current TSheets + payroll software + temp agency fees.
  2. Test Drive: Request a 30-day Elite trial to gauge ease of use.
  3. Train Key Users: Designate 1-2 admins to learn Elite’s workflows.
  4. Migrate Data: Export TSheets history into Elite (Intuit provides guides).
  5. Start Small: Pilot Elite with one department before full rollout.

The Bottom Line: Is Elite Worth It?

Switch to Elite if:

  • You’re tired of reconciling multiple time-tracking systems.
  • Most temps come from 1-2 agencies (to simplify invoicing).
  • You want all financial data (payroll, AP, AR) inside QuickBooks.

Stick with TSheets if:

  • You love its user-friendly interface.
  • Your temp agencies handle their own time tracking.

Final Thoughts

QuickBooks Elite can untangle your time-tracking mess—but it’s not a magic bullet. For 150 employees and temps, the automation gains often outweigh the costs if you invest in training.


Still unsure? Contact us or call us at 425-465-8239 for a free QuickBooks Elite vs. TSheets comparison tool or 1:1 consulting to map your payroll needs.

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